{ "_id": "6aeb311d9ceaa78f2009f4a8", "Package": "uncertR", "Type": "Package", "Title": "Bootstrap Prediction Uncertainty and Its Biological Drivers in\nGene-Expression Models", "Version": "0.1.3", "Authors@R": "person(\"Tanay\", \"Belapurkar\", email = \"btanay041@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Fits bootstrap ensembles of penalized regression models on\nbulk gene-expression data, derives per-sample uncertainty\nscores from out-of-bag predictions, and tests whether technical\ncovariates explain that uncertainty. The bootstrap method is\ndescribed by Efron and Tibshirani (1993, ISBN:9780412042317),\nand elastic-net regression follows Friedman, Hastie, and\nTibshirani (2010) . The optional\nimmunedeconv package, used for immune-cell deconvolution, is\navailable from GitHub\n.", "Encoding": "UTF-8", "License": "MIT + file LICENSE", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.1.0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-04 13:16:50 UTC", "User": "root" }, "Author": "Tanay Belapurkar [aut, cre]", "Maintainer": "Tanay Belapurkar ", "Repository": "https://btanay041.r-universe.dev", "Date/Publication": "2026-11-03 15:24:05 UTC", "RemoteUrl": "https://github.com/cran/uncertR", "RemoteRef": "HEAD", "RemoteSha": "f5ba096a75d4b8b3f9826276353eec796f36921e", "_user": "btanay041", "_type": "src", "_file": "uncertR_0.1.3.tar.gz", "_fileid": "https://r2.ropensci.org/4f3748c4fe5a7f5171faa3fa5805b8201474419fa0d529af2798ab20f9604064", "_filesize": 105730, "_sha256": "4f3748c4fe5a7f5171faa3fa5805b8201474419fa0d529af2798ab20f9604064", "_expires": "2027-02-12T13:20:27.000Z", "_created": "2026-11-04T13:16:50.000Z", "_published": "2026-11-04T13:20:29.400Z", "_upstream": "https://github.com/cran/uncertR", "_status": "success", "_maintainer": { "name": "Tanay Belapurkar", "email": "btanay041@gmail.com", "login": "btanay041", "description": "", "uuid": 294953508 }, "_jobs": [ { "job": 126597317990, "time": 128, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13326781157" }, { "job": 126597317954, "time": 118, "config": "linux-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13327670933" }, { "job": 126597317893, "time": 144, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "13327676064" }, { "job": 126597317745, "time": 185, "config": "macos-release-arm64", "r": "4.6.2", "check": "OK", "artifact": "13327111107" }, { "job": 126595752351, "time": 177, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13326681012" }, { "job": 126597318149, "time": 98, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13327720921" }, { "job": 126597317806, "time": 85, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "13327720891" }, { "job": 126597317833, "time": 87, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "13327356066" }, { "job": 126597318059, "time": 84, "config": "windows-release-x86_64", "r": "4.6.2", "check": "OK", "artifact": "13327445935" } ], "_buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274", "_commit": { "id": "f5ba096a75d4b8b3f9826276353eec796f36921e", "author": "Tanay Belapurkar ", "committer": "cran-robot ", "message": "version 0.1.3\n", "time": 1793719445 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.2.0", "role": "Depends" }, { "package": "glmnet", "role": "Imports" }, { "package": "future.apply", "role": "Imports" }, { "package": "splines", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "immunedeconv", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-45", "n": 1 } ], "_tags": [ { "name": "0.1.3", "date": "2026-11-03" } ], "_stars": 0, "_contributors": [ { "user": "btanay041", "count": 1, "uuid": 294953508 } ], "_userbio": { "uuid": 294953508, "type": "user", "name": "btanay041", "followers": 0 }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/uncertR" }, "_searchresults": 3, "_rbuild": "4.6.2", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/uncertR.html", "LICENSE" ], "_realowner": "btanay041", "_cranurl": false, "_releases": [ { "version": "0.1.3", "date": "2026-11-03" } ], "_exports": [ "boot_uncertainty", "clr_transform", "collapse_rare_levels", "tumor_covariates", "uncertainty_drivers", "uncertainty_score", "validate_uncertainty" ], "_help": [ { "page": "boot_uncertainty", "title": "Bootstrap ensemble with out-of-bag predictions", "topics": [ "boot_uncertainty" ] }, { "page": "clr_transform", "title": "Centered log-ratio transform for compositional fractions", "topics": [ "clr_transform" ] }, { "page": "collapse_rare_levels", "title": "Collapse rare factor levels", "topics": [ "collapse_rare_levels" ] }, { "page": "tumor_covariates", "title": "Assemble covariates that may drive uncertainty", "topics": [ "tumor_covariates" ] }, { "page": "uncertainty_drivers", "title": "Which covariates explain prediction uncertainty?", "topics": [ "uncertainty_drivers" ] }, { "page": "uncertainty_score", "title": "Per-sample uncertainty score from OOB predictions", "topics": [ "uncertainty_score" ] }, { "page": "validate_uncertainty", "title": "Does the uncertainty score track real error?", "topics": [ "validate_uncertainty" ] } ], "_rundeps": [ "codetools", "foreach", "future", "future.apply", "glmnet", "globals", "iterators", "lattice", "listenv", "Matrix", "parallelly", "Rcpp", "RcppEigen", "shape", "survival" ], "_vignettes": [ { "source": "uncertR.Rmd", "filename": "uncertR.html", "title": "Getting started with uncertR", "engine": "knitr::rmarkdown", "headings": [], "created": "2026-11-03 15:24:05", "modified": "2026-11-03 15:24:05", "commits": 1 } ], "_score": 2, "_indexed": true, "_nocasepkg": "uncertr", "_universes": [ "btanay041" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.3", "date": "2026-11-04T13:18:56.000Z", "distro": "resolute", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/9006cb30529ba75e0cd642ce3471c694d087e490da2f0619b897f3193a71499a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.6.2", "os": "linux", "version": "0.1.3", "date": "2026-11-04T13:18:45.000Z", "distro": "resolute", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/ec23bca5b8d6f186b2d8ffcbd1bf8f50559fc6ff3f18f95dc9df4ad990935578", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.5.3", "os": "mac", "version": "0.1.3", "date": "2026-11-04T13:18:58.000Z", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/4ee008161b9eafdc63bdaf222dd027cb5df739c040f9d04948727a2ed8143e60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.6.2", "os": "mac", "version": "0.1.3", "date": "2026-11-04T13:19:14.000Z", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/08d0d2612efb1d7f30d5584e84cbccfea8e185123266dcdc0a6bd31a750579b0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.3", "date": "2026-11-04T13:18:40.000Z", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/d18062e2d90acecc1c82cd7877ed57e5539084ee4c5e6efad7b859c22c9af3f3", "status": "success", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.7.0", "os": "win", "version": "0.1.3", "date": "2026-11-04T13:18:09.000Z", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/62c6e2fb073b3c1ea8deb3e696414db085e4ed6e937064546c98753e1adafec8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.5.3", "os": "win", "version": "0.1.3", "date": "2026-11-04T13:18:10.000Z", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/7c6c94521c6d4de967da38b1ffb04dd1ce7906c33616506a145fc72dadfe2504", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" }, { "r": "4.6.2", "os": "win", "version": "0.1.3", "date": "2026-11-04T13:18:09.000Z", "commit": "f5ba096a75d4b8b3f9826276353eec796f36921e", "fileid": "https://r2.ropensci.org/22beef1a974ac7fc9b01e41124945d367c4c3c2c3ec66f11fbbc8af371fe3b4c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/btanay041/actions/runs/41836198274" } ] }